Web30 Jun 2024 · Haplotypes from the other heterozygous individuals were resolved statistically using PHASE implemented using SeqPHASE . The chromatograms for three individuals with phasing posterior probabilities below 0.9 were inspected and in two individuals, the haplotypes were confirmed based on differences in peak height at heterozygous positions. WebSubsequently, they were inputted as “known haplotype pairs” during SeqPHASE’s step 1, thereby contributing to the phasing of the other individuals. Allele pairs with posterior …

Phylogeographic history of flat periwinkles, Littorina …

WebHere, a web tool called seqphase is presented that generates phase input files from fasta sequence alignments and converts phase output files back into fasta . During the … Web13 Sep 2016 · Genetic analyses of Australasian organisms have resulted in the identification of extensive cryptic diversity across the continent. The venomous elapid snakes are among the best-studied organismal groups in this region, but many knowledge gaps persist: for instance, despite their iconic status, the species-level diversity among Australo-Papuan … shop supervisor role

Multi-locus DNA sequence variation in a complex of four leaf …

Webwere processed in SeqPHASE (Flot, 2010). The Phase anal-ysis was repeated three times with different starting seeds to check if the phase estimates are consistent across the runs according to goodness-of-fit values. Phasing was conducted under the parent-independent mutation model with a burn-in Web18 Jul 2024 · Haplotype webs (haplowebs) and conspecificity matrices have recently been proposed as graphical methods for species delimitation. However, performing such … Web1 Sep 2014 · The angiosperm genus Logania R.Br. (Loganiaceae) is endemic to the mainland of Australia. A recent genetic study challenged the monophyly of Logania, suggesting that … shop supervisor salary